biostatUtil

The goal of biostatUtil is to provide utility functions for date formatting, survival analysis, confusion matrices, contingency tables, and data visualization.

Installation

You can install biostatUtil from GitHub with:

remotes::install_github("TalhoukLab/biostatUtil")

Note that there are a few administrative tasks to perform to ensure the package can still be installed when the R version is updated.

1. Run remotes::install_deps() to install all dependencies (these are packages listed in the Imports field of DESCRIPTION)
2. Install remaining Bioconductor dependencies with BiocManager::install()
3. Run devtools::check() to see which packages to install from Suggests field of DESCRIPTION
4. Open Terminal and run R CMD javareconf to reconfigure Java paths and other configurations. Note that Java v1.8.0 is required for java dependencies to successfully load when biostatUtil is attached.