Read RCC files and extract count and attribute data. Use read_rcc() for
multiple files, and use the parse_*() functions for single files.
Value
read_rcc() reads in a directory of RCC files and outputs a list
with two elements:
raw: A tibble of parsed counts for multiple RCC files created by callingparse_counts()on each sample. Columns include "Code.Class", "Name", "Accession", and a column for each sample ID. There is one row per gene.exp: A tibble of parsed attributes for multiple RCC files created by callingparse_attributes()on each sample. Columns include "File.Name" (sample ID), "geneRLF", "nanostring.date", "cartridgeID", "lane.number", fov.count", "fov.counted", "binding.density". There is one row per sample.
parse_counts() reads a single RCC file and returns a tibble of
parsed counts.
parse_attributes() reads a single RCC file and returns a list of
parsed attributes.
Details
RCC files for a sample are direct outputs from NanoString runs. We can
extract counts for each gene in a sample. Sample attributes include sample
ID, GeneRLF, date, cartridge ID, lane number, Fov count, Fov counted, and
binding density. read_rcc() merges both count and attribute data across
samples.
If path points to a zipped RCC file with multiple samples, the zip file is
uncompressed and a directory of RCC sample files is created with the same
name. Only file extensions ".RCC" or ".rcc" are allowed.
Examples
rcc_file <- system.file("extdata", "example.RCC", package = "nanostringr")
parse_counts(rcc_file)
#> # A tibble: 354 × 4
#> Code.Class Name Accession `TAOC00241-N1`
#> <chr> <chr> <chr> <int>
#> 1 Endogenous COL1A1 NM_000088.3 47179
#> 2 Endogenous ADAM12 NM_003474.4 158
#> 3 Endogenous BRCA2 NM_000059.3 32
#> 4 Endogenous GTF2H5 NM_207118.2 117
#> 5 Endogenous SLC7A11 NM_014331.3 33
#> 6 Endogenous HIF1A NM_001530.2 691
#> 7 Endogenous DCN NM_001920.3 2431
#> 8 Endogenous SVIL NM_003174.2 335
#> 9 Endogenous HBB NM_000518.4 292
#> 10 Endogenous MRPS27 NM_001286748.1 91
#> # ℹ 344 more rows
parse_attributes(rcc_file)
#> $File.Name
#> [1] "TAOC00241-N1"
#>
#> $geneRLF
#> [1] "OTTA2017_C6082"
#>
#> $nanostring.date
#> [1] "2018-07-24"
#>
#> $cartridgeID
#> [1] "OTTA2-108-SYD-20H"
#>
#> $lane.number
#> [1] "4"
#>
#> $fov.count
#> [1] 555
#>
#> $fov.counted
#> [1] 542
#>
#> $binding.density
#> [1] 0.27
#>
read_rcc(dirname(rcc_file))
#> $raw
#> Code.Class Name Accession example
#> 1 Endogenous COL1A1 NM_000088.3 47179
#> 2 Endogenous ADAM12 NM_003474.4 158
#> 3 Endogenous BRCA2 NM_000059.3 32
#> 4 Endogenous GTF2H5 NM_207118.2 117
#> 5 Endogenous SLC7A11 NM_014331.3 33
#> 6 Endogenous HIF1A NM_001530.2 691
#> 7 Endogenous DCN NM_001920.3 2431
#> 8 Endogenous SVIL NM_003174.2 335
#> 9 Endogenous HBB NM_000518.4 292
#> 10 Endogenous MRPS27 NM_001286748.1 91
#> 11 Endogenous CXCR3 NM_001504.1 32
#> 12 Endogenous FGFR1 NM_015850.2 690
#> 13 Endogenous ADRM1 NM_001281437.1 297
#> 14 Endogenous PSMB8 NM_004159.4 152
#> 15 Endogenous NLRP2 NM_017852.1 240
#> 16 Endogenous MATN3 NM_002381.4 97
#> 17 Endogenous FAP NM_004460.2 293
#> 18 Endogenous PCDH9 NM_020403.3 16
#> 19 Endogenous MAGEA4 NM_001011548.1 4
#> 20 Endogenous MYCN NM_005378.4 34
#> 21 Endogenous CDKN3 NM_005192.3 32
#> 22 Endogenous CILP NM_003613.3 111
#> 23 Endogenous PGRA NM_000926.4 30
#> 24 Endogenous OR1G1 NM_003555.1 10
#> 25 Endogenous PCK2 NM_004563.2 71
#> 26 Endogenous PGRB NM_000926.4 13
#> 27 Endogenous UBE2L6 NM_004223.3 298
#> 28 Endogenous KLHL7 NM_001172428.1 62
#> 29 Endogenous EYA2 NM_005244.4 211
#> 30 Endogenous CXCL10 NM_001565.1 46
#> 31 Endogenous COL3A1 NM_000090.3 40585
#> 32 Endogenous OLFML3 NM_020190.2 708
#> 33 Endogenous Notch3 NM_000435.2 609
#> 34 Endogenous ARNT NM_001668.2 128
#> 35 Endogenous ANXA4 NM_001153.2 196
#> 36 Endogenous RAD50 NM_005732.2 72
#> 37 Endogenous IGFBP2 NM_000597.2 3549
#> 38 Endogenous TSPAN8 NM_004616.2 5
#> 39 Endogenous SEMA6A NM_020796.3 104
#> 40 Endogenous IGKC AJ294735.1 3161
#> 41 Endogenous ENOX1 NM_001242863.1 50
#> 42 Endogenous SYK NM_003177.5 66
#> 43 Endogenous ROR2 NM_004560.2 232
#> 44 Endogenous GMNN NM_015895.3 44
#> 45 Endogenous CCL5 NM_002985.2 182
#> 46 Endogenous KLK10 NM_001077500.1 86
#> 47 Endogenous CD151 NM_139029.1 255
#> 48 Endogenous IL6R NM_000565.2 146
#> 49 Endogenous SNAI2 NM_003068.3 323
#> 50 Endogenous GUCY1A2 NM_000855.1 57
#> 51 Endogenous CD2 NM_001767.2 38
#> 52 Endogenous ABCF1 NM_001090.2 337
#> 53 Endogenous RAD52 NM_134424.3 11
#> 54 Endogenous ARAF NM_001654.3 224
#> 55 Endogenous CX3CR1 NM_001337.3 23
#> 56 Endogenous BAALC NM_024812.2 28
#> 57 Endogenous TUBB6 NM_032525.1 809
#> 58 Endogenous NTRK2 NM_001007097.1 41
#> 59 Endogenous OBFC1 XM_006717976.3 19
#> 60 Endogenous MYC NM_002467.3 809
#> 61 Endogenous RASA1 NM_002890.1 211
#> 62 Endogenous FAM58A NM_152274.3 85
#> 63 Endogenous ASRGL1 NM_025080.3 33
#> 64 Endogenous CPNE1 NM_001198863.1 200
#> 65 Endogenous FANCF NM_022725.2 74
#> 66 Endogenous DUSP4 NM_057158.2 96
#> 67 Endogenous SERPINE1 NM_000602.4 1796
#> 68 Endogenous ALDH5A1 NM_001080.3 59
#> 69 Endogenous CDH11 NM_001797.2 934
#> 70 Endogenous SLC15A3 NM_016582.1 450
#> 71 Endogenous RFC2 NM_181471.1 56
#> 72 Endogenous MFAP5 NM_003480.2 104
#> 73 Endogenous CXCL12 NM_199168.3 1593
#> 74 Endogenous WDR91 NM_014149.3 109
#> 75 Endogenous IRF1 NM_002198.1 168
#> 76 Endogenous ZEB1 NM_001128128.1 170
#> 77 Endogenous RAD17 NM_133338.1 17
#> 78 Endogenous FOXJ1 NM_001454.3 34
#> 79 Endogenous STK39 NM_013233.2 58
#> 80 Endogenous CXCL11 NM_005409.3 50
#> 81 Endogenous CD302 NM_014880.4 78
#> 82 Endogenous FCHSD2 NM_014824.2 104
#> 83 Endogenous SUPT6H NM_003170.3 248
#> 84 Endogenous PAX8 NM_013953.3 523
#> 85 Endogenous B4GALT5 NM_004776.3 395
#> 86 Endogenous CRABP1 NM_004378.2 5
#> 87 Endogenous NBN NM_002485.4 169
#> 88 Endogenous DNAJC9 NM_015190.3 79
#> 89 Endogenous ZNF165 NM_003447.3 63
#> 90 Endogenous PD-L1 NM_014143.3 41
#> 91 Endogenous GFRA1 NM_005264.4 24
#> 92 Endogenous SLC4A11 NM_001174090.1 80
#> 93 Endogenous DGCR2 NM_001173534.1 107
#> 94 Endogenous PTH2R NM_005048.2 30
#> 95 Endogenous FCER1G NM_004106.1 266
#> 96 Endogenous SMARCA4 NM_003072.3 146
#> 97 Endogenous ABCC2 NM_000392.3 7
#> 98 Endogenous UCHL1 NM_004181.4 28
#> 99 Endogenous RCCD1 NM_001017919.1 48
#> 100 Endogenous RB1 NM_000321.1 95
#> 101 Endogenous DPPA2 NM_138815.2 6
#> 102 Endogenous TMEM45A NM_018004.1 168
#> 103 Endogenous FEN1 NM_004111.4 18
#> 104 Endogenous EXO1 NM_003686.3 26
#> 105 Endogenous ABCE1 NM_001040876.1 138
#> 106 Endogenous HIST1H2AM NM_003514.2 426
#> 107 Endogenous MITF NM_000248.2 37
#> 108 Endogenous PPP2R4 NM_021131.4 80
#> 109 Endogenous SLAMF8 NM_020125.2 17
#> 110 Endogenous CDH1 NM_004360.2 295
#> 111 Endogenous RAD23A NM_005053.2 165
#> 112 Endogenous LUM NM_002345.3 5282
#> 113 Endogenous SERPINF1 NM_002615.4 1050
#> 114 Endogenous BST2 NM_004335.2 137
#> 115 Endogenous ULK1 NM_003565.1 118
#> 116 Endogenous AXL NM_021913.2 259
#> 117 Endogenous SALL2 NM_005407.1 64
#> 118 Endogenous ESR2 NM_001040275.1 17
#> 119 Endogenous THBS1 NM_003246.2 4480
#> 120 Endogenous MMP11 NM_005940.3 1428
#> 121 Endogenous BRCA1 NM_007294.3 8
#> 122 Endogenous IDO1 NM_002164.3 54
#> 123 Endogenous ABRAXAS2 NM_032182.3 44
#> 124 Endogenous TLR4 NR_024168.1 75
#> 125 Endogenous HIST1H2BD NM_021063.2 188
#> 126 Endogenous MUC16 NM_024690.2 126
#> 127 Endogenous SCGB1D2 NM_006551.3 6
#> 128 Endogenous MAK NM_005906.3 29
#> 129 Endogenous Drosha NM_001100412.1 122
#> 130 Endogenous OPA1 NM_130837.1 240
#> 131 Endogenous CAV1 NM_001753.3 112
#> 132 Endogenous CNOT4 NM_001190848.1 106
#> 133 Endogenous LAMC2 NM_005562.2 715
#> 134 Endogenous SRI NM_003130.2 388
#> 135 Endogenous FBN1 NM_000138.3 359
#> 136 Endogenous CTLA4 NM_005214.3 34
#> 137 Endogenous TNC NM_002160.3 113
#> 138 Endogenous C9orf82 NM_001167575.1 30
#> 139 Endogenous VCAM1 NM_001078.3 454
#> 140 Endogenous EFEMP1 NM_004105.3 112
#> 141 Endogenous PAX2 NM_000278.3 21
#> 142 Endogenous ENPP1 NM_006208.1 154
#> 143 Endogenous AKT1S1 NM_032375.3 77
#> 144 Endogenous CXCL14 NM_004887.4 400
#> 145 Endogenous DAB2 NM_001343.2 473
#> 146 Endogenous GJB1 NM_000166.5 6
#> 147 Endogenous VCAN NM_004385.3 488
#> 148 Endogenous POLR2E NM_002695.3 39
#> 149 Endogenous PD-1 NM_005018.1 11
#> 150 Endogenous RHOBTB3 NM_014899.3 140
#> 151 Endogenous COL10A1 NM_000493.3 1047
#> 152 Endogenous HMGA2 NM_003484.1 157
#> 153 Endogenous MAP2K4 NM_003010.2 127
#> 154 Endogenous CD3D NM_000732.4 44
#> 155 Endogenous USP8 NM_001128610.1 238
#> 156 Endogenous APBB2 NM_173075.4 242
#> 157 Endogenous CD74 NM_001025158.1 4406
#> 158 Endogenous IGHM ENST00000390559.1 118
#> 159 Endogenous SMO NM_005631.3 43
#> 160 Endogenous FABP4 NM_001442.2 360
#> 161 Endogenous IL22 NM_020525.4 10
#> 162 Endogenous XRCC6 NM_001469.3 256
#> 163 Endogenous TAP1 NM_000593.5 77
#> 164 Endogenous PTTG1 NM_004219.2 48
#> 165 Endogenous TSHR NM_001018036.2 4
#> 166 Endogenous ZFHX4 NM_024721.4 76
#> 167 Endogenous CAPN9 NM_006615.2 7
#> 168 Endogenous INHBA NM_002192.2 758
#> 169 Endogenous ANKRD1 NM_014391.2 26
#> 170 Endogenous CTNNBL1 NM_030877.3 36
#> 171 Endogenous TAGLN NM_003186.3 3567
#> 172 Endogenous ALDH1A1 NM_000689.3 76
#> 173 Endogenous NUCB2 NM_005013.2 151
#> 174 Endogenous FZD10 NM_007197.2 32
#> 175 Endogenous SPTLC2 NM_004863.3 72
#> 176 Endogenous CD38 NM_001775.2 21
#> 177 Endogenous SPARC NM_003118.2 27155
#> 178 Endogenous PLK2 NM_006622.2 357
#> 179 Endogenous TBX2 NM_005994.3 85
#> 180 Endogenous ESR1 NM_000125.2 326
#> 181 Endogenous ABCC1 NM_004996.3 159
#> 182 Endogenous HIC5 NM_001042454.1 475
#> 183 Endogenous COBL NM_015198.3 45
#> 184 Endogenous MCM3 NM_002388.3 188
#> 185 Endogenous ITGB5 NM_002213.3 559
#> 186 Endogenous COL11A1 NM_001854.3 1420
#> 187 Endogenous RARRES1 NM_002888.2 201
#> 188 Endogenous PCNA NM_002592.2 122
#> 189 Endogenous AR NM_001011645.1 56
#> 190 Endogenous MEST NM_177525.1 189
#> 191 Endogenous EZR NM_003379.4 960
#> 192 Endogenous TUBB2 NM_001069.2 223
#> 193 Endogenous PARP1 NM_001618.3 170
#> 194 Endogenous LRRC15 NM_001135057.2 510
#> 195 Endogenous COL1A2 NM_000089.3 27607
#> 196 Endogenous LOX NM_002317.4 428
#> 197 Endogenous CD68 NM_001251.2 274
#> 198 Endogenous CD8A NM_001768.5 143
#> 199 Endogenous CDKN2A NM_000077.4 81
#> 200 Endogenous APPL2 NM_018171.3 49
#> 201 Endogenous PRAME NM_006115.4 184
#> 202 Endogenous KRT6 NM_005554.3 15
#> 203 Endogenous DUSP1 NM_004417.2 5327
#> 204 Endogenous IGF2 NM_000612.4 243
#> 205 Endogenous NDRG3 NM_032013.3 81
#> 206 Endogenous RARRES2 NM_002889.3 3655
#> 207 Endogenous THBS2 NM_003247.2 3168
#> 208 Endogenous ZNF423 NM_015069.2 46
#> 209 Endogenous DLEC1 NM_007335.2 22
#> 210 Endogenous TPD52L1 NM_003287.2 54
#> 211 Endogenous OASL NM_198213.1 25
#> 212 Endogenous APC NM_000038.3 91
#> 213 Endogenous WWP1 NM_007013.3 170
#> 214 Endogenous TP53 NM_000546.2 172
#> 215 Endogenous PIK3CA NM_006218.2 288
#> 216 Endogenous PTGIS NM_000961.3 704
#> 217 Endogenous POSTN NM_006475.2 490
#> 218 Endogenous TIMP3 NM_000362.4 3969
#> 219 Endogenous RAD23B NM_002874.3 204
#> 220 Endogenous KIFC1 NM_002263.3 99
#> 221 Endogenous BNIP3L NM_004331.2 275
#> 222 Endogenous RAD51B NM_002877.4 26
#> 223 Endogenous GALNT6 NM_007210.3 106
#> 224 Endogenous NUAK1 NM_014840.2 136
#> 225 Endogenous RP11-89M16.1 NR_121672.1 34
#> 226 Endogenous ATP5A1 NM_001001937.1 475
#> 227 Endogenous WT1 NM_000378.3 538
#> 228 Endogenous TMEM158 NM_015444.2 4140
#> 229 Endogenous SFRP4 NM_003014.2 5043
#> 230 Endogenous SNRPA1 NM_003090.2 168
#> 231 Endogenous CXCR4 NM_003467.2 1478
#> 232 Endogenous YWHAB NM_003404.4 858
#> 233 Endogenous EPB41L3 NM_012307.2 150
#> 234 Endogenous FGF1 NM_033137.1 52
#> 235 Endogenous SCGB2A1 NM_002407.2 23
#> 236 Endogenous MSLN NM_013404.3 1501
#> 237 Endogenous FOXRED2 NM_001102371.1 57
#> 238 Endogenous STK16 NM_003691.2 88
#> 239 Endogenous TESK1 NM_006285.2 29
#> 240 Endogenous DUSP6 NM_001946.2 209
#> 241 Endogenous CTSK NM_000396.2 2363
#> 242 Endogenous SLAMF7 NM_021181.3 90
#> 243 Endogenous PTK2 NM_005607.4 243
#> 244 Endogenous PARP4 NM_006437.3 289
#> 245 Endogenous CXCL9 NM_002416.1 233
#> 246 Endogenous CYTIP NM_004288.4 100
#> 247 Endogenous MRE11A NM_005591.3 81
#> 248 Endogenous ESD NM_001984.1 193
#> 249 Endogenous PDGFRB NM_002609.3 314
#> 250 Endogenous UCP2 NM_003355.2 61
#> 251 Endogenous MINPP1 NM_001178117.1 39
#> 252 Endogenous NLRP7 NM_139176.3 33
#> 253 Endogenous FN1 NM_002026.2 7163
#> 254 Endogenous IGJ NM_144646.3 84
#> 255 Endogenous AEBP1 NM_001129.3 4719
#> 256 Endogenous PGCP NM_016134.2 160
#> 257 Endogenous IGFBP4 NM_001552.2 3068
#> 258 Endogenous TCF7L1 NM_031283.1 43
#> 259 Endogenous CCNE1 NM_001238.1 63
#> 260 Endogenous CFLAR NM_001127183.1 90
#> 261 Endogenous NEAT1 NR_028272.1 9235
#> 262 Endogenous GUSB NM_000181.3 224
#> 263 Endogenous CRABP2 NM_001878.2 858
#> 264 Endogenous TUG1 NR_002323.1 174
#> 265 Endogenous CSF1R NM_005211.2 33
#> 266 Endogenous FBX038 NM_030793.4 124
#> 267 Endogenous SAC3D1 NM_013299.3 32
#> 268 Endogenous KIF1A NM_004321.4 157
#> 269 Endogenous ADH1B NM_000668.4 218
#> 270 Endogenous VSIG4 NM_001100431.1 172
#> 271 Endogenous L3MBTL NM_015478.6 41
#> 272 Endogenous TGFB2 NM_003238.2 56
#> 273 Endogenous CPEB1 NM_030594.3 20
#> 274 Endogenous ZFAS1 NR_003605.1 830
#> 275 Endogenous LUZP1 NM_033631.3 114
#> 276 Endogenous MAP4K3 NM_003618.2 194
#> 277 Endogenous FLNC NM_001127487.1 273
#> 278 Endogenous CLTA NM_001184762.1 293
#> 279 Endogenous NF1 NM_000267.2 181
#> 280 Endogenous CDK6 NM_001259.6 178
#> 281 Endogenous HNF1B NM_000458.1 16
#> 282 Endogenous ADAMDEC1 NM_014479.2 14
#> 283 Endogenous MYOD1 NM_002478.4 5
#> 284 Endogenous TRIM27 NM_006510.4 109
#> 285 Endogenous ABCB1 NM_000927.3 54
#> 286 Endogenous WDR77 NM_024102.2 283
#> 287 Endogenous HSP90AA1 NM_001017963.2 1105
#> 288 Endogenous CCL20 NM_004591.1 84
#> 289 Endogenous C19orf12 NM_031448.3 63
#> 290 Endogenous CTHRC1 NM_138455.2 2105
#> 291 Endogenous ROR1 NM_001083592.1 85
#> 292 Endogenous MDM2 NM_032739.1 164
#> 293 Endogenous NUAK2 NM_030952.1 408
#> 294 Endogenous CRISPLD2 NM_031476.3 1332
#> 295 Endogenous NSDHL NM_001129765.1 66
#> 296 Endogenous COL5A2 NM_000393.3 2686
#> 297 Endogenous GMPR NM_006877.3 91
#> 298 Endogenous FOLR1 NM_000802.2 160
#> 299 Endogenous CYP4B1 NM_000779.3 83
#> 300 Endogenous ABCC3 NM_001144070.1 27
#> 301 Endogenous SHPRH NM_001042683.2 77
#> 302 Endogenous RNASEL NM_021133.3 58
#> 303 Endogenous LPAR3 NM_012152.1 337
#> 304 Endogenous IGF1 NM_000618.3 793
#> 305 Endogenous POLE NM_006231.3 31
#> 306 Endogenous E2F6 NM_198325.1 96
#> 307 Endogenous PTEN NM_000314.3 506
#> 308 Endogenous MDM4 NM_001204172.1 136
#> 309 Endogenous LGALS1 NM_002305.3 2941
#> 310 Endogenous COL5A1 NM_000093.3 2297
#> 311 Endogenous POLR2I NM_006233.4 213
#> 312 Endogenous RBMS3 NM_001003792.2 33
#> 313 Endogenous ZIP4 NM_017767.2 49
#> 314 Endogenous ABHD1 NM_032604.3 10
#> 315 Endogenous UQCC NM_199487.2 72
#> 316 Endogenous MMP7 NM_002423.3 3811
#> 317 Endogenous Dicer NM_177438.2 186
#> 318 Endogenous PRKCQ NM_006257.2 48
#> 319 Endogenous FOXP3 NM_014009.3 18
#> 320 Endogenous MMP2 NM_004530.2 909
#> 321 Endogenous EDNRA NM_001957.1 106
#> 322 Endogenous KDM5D NM_001146705.1 4
#> 323 Endogenous CD3e NM_000733.2 33
#> 324 Endogenous RAD51C NM_002876.2 67
#> 325 Endogenous PDZK1IP1 NM_005764.3 23
#> 326 Endogenous PI3 NM_002638.3 18
#> 327 Endogenous PVT1 NR_003367.1 26
#> 328 Endogenous CD27 NM_001242.4 22
#> 329 Endogenous IGFBP6 NM_002178.2 110
#> 330 Endogenous MAL NM_002371.2 55
#> 331 Endogenous PTGER3 NM_000957.2 125
#> 332 Endogenous HIGD1B NM_016438.2 9
#> 333 Endogenous SOX17 NM_022454.3 294
#> 334 Endogenous GFPT2 NM_005110.2 73
#> 335 Endogenous PRKCI NM_002740.5 1655
#> 336 Positive POS_C(8) ERCC_00002.1 4307
#> 337 Positive POS_A(128) ERCC_00117.1 56906
#> 338 Positive POS_F(0.125) ERCC_00034.1 94
#> 339 Positive POS_D(2) ERCC_00092.1 1064
#> 340 Positive POS_B(32) ERCC_00112.1 14747
#> 341 Positive POS_E(0.5) ERCC_00035.1 220
#> 342 Negative NEG_C(0) ERCC_00019.1 3
#> 343 Negative NEG_D(0) ERCC_00076.1 4
#> 344 Negative NEG_E(0) ERCC_00098.1 21
#> 345 Negative NEG_A(0) ERCC_00096.1 14
#> 346 Negative NEG_H(0) ERCC_00154.1 0
#> 347 Negative NEG_G(0) ERCC_00144.1 2
#> 348 Negative NEG_F(0) ERCC_00126.1 11
#> 349 Negative NEG_B(0) ERCC_00041.1 5
#> 350 Housekeeping POLR1B NM_019014.3 80
#> 351 Housekeeping PGK1 NM_000291.2 1445
#> 352 Housekeeping RPL19 NM_000981.3 9440
#> 353 Housekeeping ACTB NM_001101.2 11985
#> 354 Housekeeping SDHA NM_004168.1 110
#>
#> $exp
#> sample geneRLF nanostring.date cartridgeID lane.number
#> 1 example OTTA2017_C6082 2018-07-24 OTTA2-108-SYD-20H 4
#> fov.count fov.counted binding.density
#> 1 555 542 0.27
#>