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Changelog

Source: NEWS.md

nanostringr 0.4.1

CRAN release: 2023-08-15

  • Fix warning regarding old-style CITATION
  • Add ORCID to package authors
  • Use GitHub Actions for pkgdown site
  • use stricter R CMD check standard workflow
  • decrease package dependencies: removed epiR, forcats, tibble from Imports, moved magrittr to Suggests

nanostringr 0.4.0

CRAN release: 2022-08-19

nanostringr 0.3.0

CRAN release: 2022-05-24

  • fix calculation of genes detected so that the limit of detection is compared in parallel to each sample’s counts instead of being recycled, #20

  • use GitHub Actions for CI, replacing Travis and Appveyor

  • add gene label “PC_1” for checking smallest positive control

  • more robust extraction of numeric concentrations from PC gene labels

nanostringr 0.2.0

CRAN release: 2021-02-06

  • use RCC file names in parsed data of read_rcc(). Also rename gene name CD3E to CD3e for compatibility purposes

  • update roxygen

  • remove Rplots.pdf generated from tests, removed deprecated context()

nanostringr 0.1.4

CRAN release: 2019-05-09

  • reduce package dependencies from Imports

  • remove old packages from Suggests

  • performance gains in refMethod()

  • raw parameter in NanoStringQC() now accepts tibbles

nanostringr 0.1.3

CRAN release: 2019-04-24

  • check for presence of “Positive” and “Negative” genes in NanoStringQC()

  • remove most code lints

  • unit tests for read_rcc() and internal functions check_colnames(), check_genes()

  • fix bug using NanoStringQC() for single sample data

nanostringr 0.1.2

CRAN release: 2019-04-03

  • sort sample names in HLD and OVD cohorts by numeric order, not lexicographic order

  • tidy up code in HKnorm()

  • use tidy evaluation in NanostringQC()

  • use vapply() over sapply() for input checking functions

nanostringr 0.1.1

CRAN release: 2019-03-25

  • update citation to link to PLOS paper

nanostringr 0.1.0

CRAN release: 2019-03-15

  • New submission to CRAN accepted on March 15, 2019